Maize single cell

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August undefined, 2024

WebDec 1, 2024 · Single-cell RNA sequencing reveals the landscape of maize root tips and assists in identification of cell type-specific nitrate-response genes 1. Introduction. …

Single-cell RNA sequencing reveals the landscape of …

WebMaize Single Cell Cis Regulatory Atlas. This repository contains scripts used in the analysis of maize scATAC-seq atlas data. Scripts are provided as is. However, there may be an effort in the future to translate this code into an R package for streamlined analysis depending on demand. Users should be aware that the majority of this code was ... WebMaize brown midrib (bm) mutants associated with impaired lignin biosynthesis are a potential source for the breed of novel germplasms with improved cell wall digestibility. ... Furthermore, five 4CLs were retrieved from maize genome, and Zm4CL1 was the most highly expressed one in the lignified tissues. Mutation of Zm4CL1 mainly impeded the ... switchboard symbol in autocad

A cis-regulatory atlas in maize at single-cell resolution bioRxiv

WebJan 13, 2024 · A single-cell-resolution map of the maize root meristem, consisting of 14,775 high-quality sequenced cells, identified 21 cell clusters, which were then spatially mapped back to the... WebMay 7, 2024 · Using single-cell genomics in six maize organs, we determined the cis- and trans-regulatory factors defining diverse cell identities and coordinating chromatin … WebSep 20, 2024 · Single-cell analysis enters the multiomics age Proteomics aims to catalogue and characterize the total complement of protein isoforms from a cell, tissue, organ or organism. (These... switchboard systems brendale

Defining the developmental program leading to meiosis in maize

Gene Expression and Chromatin Modifications Associated with Maize ...

WebOct 23, 2024 · To identify CREs underlying the specification of different organs in the crop species Zea mays (maize), Marand and colleagues improved a protocol for single-cell sequencing of Assay for Transposase Accessible Chromatin (scATAC-seq). WebA cis-regulatory atlas in maize at single-cell resolution Highlights • Human selection and retrotransposons shaped the maize cis -regulatory landscape • Analysis of 92 patterns of … switchboard tta centerWeb1 day ago · Maize (Zea mays) is an important crop plant with distinctive life history characteristics and structural features. Genetic studies have extended our knowledge of maize developmental processes, genetics, and molecular ecophysiology. ... one egg cell, two polar nuclei, two synergids, and three antipodal cells (Randolph 1936; Huang and … switchboard standards australia

"WebApr 6, 2024 · Here, we present a single-cell RNA (scRNA) sequencing and chromatin accessibility survey of rice radicles. By temporal profiling of individual root tip cells we reconstruct continuous... " - Maize single cell

Maize single cell

WebJan 27, 2024 · Nelms and Walbot sequenced RNA content of single maize pollen precursor cells and grains through the 26 days from the beginning of meiosis to pollen shed. … WebDec 14, 2024 · The fine-scale resolution of single-cell analysis was used to reconstruct the process of shoot cell differentiation, whereby stem cells acquire diverse and distinct cell fates over...

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WebNov 12, 2015 · Centromeric chromatin contains the histone H3 variant cenH3 (CENP-A in humans, CENH3 in maize)—a defining feature of centromeres (Henikoff et al. 2001).While this H3 variant makes up only a small percentage of the total H3 population in centromeres (Fukagawa and Earnshaw 2014), it plays a central role in recruiting other centromere … WebSep 28, 2024 · We describe 92 distinct states of chromatin accessibility across more than 165,913 putative CREs, 56,575 cells, and 52 known cell-types in maize using a novel implementation of regularized quasibinomial logistic regression.

WebXu et al. construct and validate a single-cell transcriptomic atlas of developing maize ears. Their single-cell gene co-expression networks will facilitate developmental genetics studies by predicting genetic redundancy and revealing transcriptional regulatory networks. Their results also inform maize breeding by identifying candidate trait-associated genes. WebOct 23, 2024 · Single-cell sequencing technology emerged recently, enabling high-throughput analyses of the cell lineage trees of higher organisms 20. In plants, single …

WebFeb 4, 2024 · Single-cell RNA sequencing (scRNA-seq) technology has recently been used to examine the cellular identity and heterogeneity of several complex plant tissues in maize ( Zea mays) (Nelms & Walbot, 2024; Satterlee et al ., 2024; Marand et al ., 2024; Xu et al ., 2024 ), Arabidopsis (Denyer et al ., 2024; Zhang et al ., 2024, 2024b; Satterlee et al … WebApr 1, 2024 · Synergetic elongation of mesocotyl and coleoptile are crucial in governing maize seedlings emergence, especially for the maize sown in deep soil. Studying the genomic regions controlling maize deep-sowing tolerance would aid the development of new varieties that are resistant to harsh conditions, such as drought and low temperature …

WebSingle-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery Highlights • scRNA-seq of developing maize ears reveals …

WebOct 18, 2024 · Single-cell genomics has moved beyond model systems into crops, including maize and rice, with new understanding of tissue-level expression and accessibility. New technologies in other systems give us hope that plant biologists can both increase the number of cells assayed in single-cell experiments and decrease the cost to assay … switchboard trash adrenalin tubWebSep 27, 2024 · We describe 92 distinct states of chromatin accessibility across more than 165,913 putative CREs, 56,575 cells, and 52 known cell-types in maize using a novel implementation of regularized ... switchboard vs circuit breakerWebOct 11, 2024 · Implementing single cell RNA-seq of maize leaf protoplasts transiently expressing anther transcription factors is a new approach to organizing regulatory hierarchies for maize somatic anther cells 10.1111/tpj.16045. 2 new studies on 24-nt phasiRNA Two published studies established new aspects of 24-nt phasiRNA biology. switchboards waWebMay 7, 2024 · In the team’s study, published in Cell, the researchers focused on maize, creating a reference atlas of 52 cell types, more than 30 of which had never been described at a molecular level previously. Single-cell sequencing, which captures cells in between different states, allowed them to reconstruct their developmental history, delineating ... switchboard thermal imaging regulationsWebNational Center for Biotechnology Information switchboard vs switchgearWebApr 26, 2024 · We have developed a planta platform of single-nucleus RNA-sequencing by combined fluorescence-activated nuclei flow sorting, and used it to identify cell types in … switchboard worker crossword clueWeblation of living plant stem cells enabled this single-cell tran-scriptomic analysis of a plant vegetative shoot meristem. Two zones of cell identity are identified within the maize SAM: 1) a slowly dividing stem-cell domain at the SAM tip expressing genes with functions in genome integrity, and 2) a subtending pop- switchboard vs mcc